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Database of Interacting Proteins
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Nucleic Acids Research Database Issue Reports
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The Database of Interacting Proteins: 2004 update.
Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D
NAR 32(Database issue):D449-51 (2004)
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DIP: The Database of Interacting Proteins. A research tool for studying cellular networks of protein interactions.
Xenarios I, Salwinski L, Duan XJ, Higney P, Kim S, Eisenberg D
NAR 30:303-5 (2002)
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DIP: The Database of Interacting Proteins: 2001 update.
Xenarios I, Fernandez E, Salwinski L, Duan XJ, Thompson MJ, Marcotte EM, Eisenberg D
NAR 29:239-41 (2001)
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DIP: The Database of Interacting Proteins.
Xenarios I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D
NAR 28:289-91 (2000)
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Ineraction Data Standards
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Broadening the horizon-level 2.5 of the HUPO-PSI format for molecular interactions.
Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF et al.
BMC Biol. 5:44 (2007)
[PubMed]
[Article]
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Submit your interaction data the IMEx way: a step by step guide to trouble-free deposition.
Orchard S, Kerrien S, Jones P, Ceol A, Chatr-Aryamontri A, Salwinski L, Nerothin J, Hermjakob H.
Proteomics 7:S28-34 (2007)
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[Article]
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The minimum information required for reporting a molecular interaction experiment (MIMIx).
Orchard S, Salwinski L, Kerrien S, Montecchi-Palazzi L, Oesterheld M et al.
Nat Biotechnol. 25:894-8 (2007)
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The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L et al.
Nat Biotechnol. 22:177-83 (2004)
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DIP Related Articles
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Detecting coordinated regulation of multi-protein complexes using logic analysis of gene expression.
Sprinzak E, Cokus SJ, Yeates TO, Eisenberg D, Pellegrini M
BMC Syst Biol 3:115 (2009)
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Recurated protein interaction datasets.
Salwinski L, Licata L, Winter A, Thorneycroft D, Khadake J et al.
Nat Methods. 6:860-1 (2009)
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The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.
Salwinski L, Eisenberg D.
Bioinformatics. 23:2193-5 (2007)
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Protein interactions: Two methods for assessment of the reliability of high-throughput observations.
Deane CM, Salwinski L, Xenarios I, Eisenberg D
Mol Cell Prot 1:349-356 (2002)
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Bioinformatic identification of potential autocrine signaling loops in cancer using gene expression profiles.
Graeber TG, Eisenberg D
Nat.Genet. 29:295-300 (2001)
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Mining literature for protein-protein interactions.
Marcotte EM, Xenarios I, Eisenberg D
Bioinformatics 17:359-63
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Reviews
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Salwinski L, Eisenberg D (2003)
Computational methods of analysis of protein-protein interactions.
Curr Opin Struct Biol 13:377-382
[MED][PUB][PDF]
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Xenarios I, Eisenberg D (2001)
Protein interaction databases.
Curr Opin Biotechnol 12:334-339
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Copyright 1999-2017 UCLA. All DIP database records available through this Web Site are freely available under the terms set by the Creative Commons Attribution-NoDerivs License. This means that you are free to copy, distribute, display and make commercial use of these databases in all legislations, provided you give us credit. However, if you intend to distribute data from our database, you must ask us for permission first.
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