 |
Database of Interacting Proteins
|
|
|
|
|
|
| The DIP database can be searched in a number of ways to
retrieve the information about specific protein or interaction.
It is also possible to retrieve entire groups of proteins or
interactions fulfiling user-specified criteria.
|
|
Search Types
|
|---|
|
Node | Search the database for matches within the various fields
describing protein (node) entries.
The results are returned as a list of proteins that fulfill the criteria specified.
|
|
BLAST | Search the database for sequences matching a particular sequence or its
fragment. The results are returned as a list of proteins sorted by the BLAST
significance score (p-value).
|
|
Motif | Search the database for proteins containing a domain or motif
defined by one of the domain/motif databases:
Prosite,
InterPro,
Pfam,
PRINTS or
SMART,
or as a user-specified regular expression.
|
|
Article | Search the database for interactions described in selected article(s).
The results are returned as a list of interactions that were described by at least one experiment from the selected article(s).
|
|
IMEx | Search the database for interactions supported by experiments annotated according to the curation rules adopted by IMEx, a consortium that was established by DIP, together with other consortium partners, in order to standardize annotation of experiments demonstrating protein interactions. The results of the search are returned as a list of interactions that are supported by at least one experiment annotated according to the IMEx Consortium standard.
|
|
pathBLAST |
Search the protein-protein interaction network of the target
organism to extract all protein interaction pathways that
align with the query pathway.
[NOTE] This is external service provided by
Trey Ideker's group
at UCSD.
|
 |
|
|
Copyright 1999-2017 UCLA. All DIP database records available through this Web Site are freely available under the terms set by the Creative Commons Attribution-NoDerivs License. This means that you are free to copy, distribute, display and make commercial use of these databases in all legislations, provided you give us credit. However, if you intend to distribute data from our database, you must ask us for permission first.
|
|
|
|
|
