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MiSink is an add-on module (plugin) for
Cytoscape - an open
source platform for visualization and integration of biological
interaction data. Installation of MiSink converts it into an
interactive, graphical interface to DIP and, potentially other,
other MiSink-enabled Web sites. This is possible, from the
end-user perspective, by implementing, within MiSink, three
additional operations:
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adding to the current Cytoscape network nodes and edges 'advertised'
by a Web site through
and
icons.
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visiting sites that provide annotation of the imported nodes/edges
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finding information about the neighbouring nodes
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In addition, MiSink can be used to import into Cytoscape data from
tab-delimited or XML files. Data in practically arbitrary
format can be imported thanks to strightforward configuration based
on simple, yet powerful, XPath language.
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A. The 'cDIP' icons available on some of the DIP Web pages
can be used to load additional information into the current Cytoscape
network. Depending on the context, interactions (green for core, blue
for all) or just nodes can be imported.
B. Clicking on one of the 'cDIP' icons resulted in loading of the
additional interactions into the current network.
C. Choosing 'UniProt' or 'RefSeq' options from the pulldown menu
brings up corresponding page on, respectively, UniProt or RefSeq site.
D. An additional menu (accessible through the right mouse click) is
available after installation of the MiSink Plugin for nodes uploaded from DIP
web site. Choosing 'DIP' option there loads corresponding DIP web page into
the default web browser.
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